Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015814370.1_cds_XP_016497885.1_11972
CDS Infomation

[gene=LOC107816669] [db_xref=GeneID:107816669] [protein=synaptotagmin-5-like isoform X2] [protein_id=XP_016497885.1] [location=join(29342..29347,29615..29689,29777..29884,30120..30152,30250..30339,30428..30553,30859..31002,31210..31626,32145..32279,33283..33507,33697..33972,34149..34286,34558..34863,34966..35193)] [gbkey=CDS]
Sequence

ATGCAGTATGGAAGTTACCAGCGCAAAATTCTTGCGGAAGACTTGAATAAGAAATGGATG
CAAGTGTTGCTGGAGACATCACCAACAACACCTTTGGAGCAGTGTGAGTGGCTGAACAAG
CTACTAATTGAAATTTGGCCTACTTATATGAGCCCAAGGCTTTCTTTGAGGTTCTCTTCT
ATTGTTGAGAGACGCATGAAACAACGAAAACCAAAGTTGATTGAAAAGATCGAATTACAA
GAATTTTCACTTGGTTCTAAACCTCCGCTCTTAGGGCTTCGTGGGATACGGTGGTCAACT
TCCGGTGATCAGAAAATTGTGCATCTTGGTTTTGACTGGGACACTACCGATATAAGTATC
ATGTTGCTTGCCAAGTTGGGAAAGCCTTTAATGGGGACTGCTCGGATAGTTATTAACAGC
ATCCACATCAAGGGTGATCTCCGCTTAGTGCCAGTTCTAGATGGAAGAGCATTTTTATAC
TCATTTGTGGCGCCTCCGGAGGTTAGGATAGGCGTTGCATTTGGAAGTGGTGGAAGCCAA
TCTCTTCCAGCAACTGAGCTGCCAGGTGTTTCTGCATGGCTGGTTAAACTTGTTAATGAC
TCCTTATCTAAGAGGATGGTTGAACCTCGCCGTAATTGTTTTTCTTTGCCTGCGGTAAAT
TTATTCAAAAGGGCTGTCGCTGGTGTACTCTCAGTGACCGTGATGTCTGCCAGCAAATTG
TCAAGAAGTAACCTGAGGAGTAGCCCTTCCAGGAAACAAAGCTCATCGACAGATAGTTAT
GTGGAGAATCTCCATGATTACAAGGATTTGCGGACATTTGTCGAGGTTGAACTTGAAGAA
TTAACCAGGAAAACAGATGTCAGACCAGGATCCTGCCCTAGATGGGACTCAAAGTTCAAT
ATGACTCTACATGAGGATGCAGGAACAATTAGGTTCAATTTATTTGAATGTACTCCTGGC
AGCGTGAAGTATGACTATCTGACAAGCTGTGAAATAAAGATGAGATATGTTGCAGATGAT
TCAACAATGTTTTGGGCAACGGGAGCTGACTCCGCTGCTATAGCCAGGCGTGCTGAGTTT
TGTGGTAAAGAAATTGAAATGACGGTTCCATTTGAGGGGATTAATTCAGGAGAGTTGACA
GTGAAACTCGTCTTGAAGGAATGGCAATTCGCTGATGGTTCAGATAGCTCGAACGGTTTA
CCTATCAGCTCTCAGCATTCACTCAATAGTACATCAAGTTTTCTACCTAGAACAGGAAGA
AAAATCTACGTGACAATAGTTGAAGGAAAGGACCTTCCATCAAAAGATAAATTTGGAAAG
CCTGGTTCTGGCTGTTACGTAAAATTCCAGTACGGGAAGGCTCTGAAGAGAACGAGAACT
GTTTCACATACTTCAGATCCTACCTGGAATCAGAAGTTTGAATTTGATGAAATAAGTGGT
GGTGAATATCTGAAGATAAAGTGCTTCATTGAGGAGATGTTTGGAGATGAGAACATTGGT
AGTGCACGAGTAAGCTTAGAAGGACTTATAGAGGGGTCCCCGAGGGACGTGTGGATTCCT
CTCGAGAAAGTGAATTCTGGAGAATTGCGGCTCCAGATAGAAGCAGTCAGAGTTGATGAC
TATGAAGGATCCAAGGGTTCAAATGGTAGTTCTTCCAATGGTTGGGTTGAACTTGCTCTC
ATCGAGGCAAAAGACCTTGTTGCTGCGGATCTCCGAGGAACCAGTGATCCTTATGTGAGG
GTACAATATGGCAATTTGAAGAGAAGAACTAAGGTTATGTACAAAACTTTGCATCCTCAA
TGGCACCAGACATTAGAATTTCCCGATGATGGGAGTCCCCTGGAGTTGCATGTTAAGGAC
CACAACCATTTACTGCCAACAGCAAGCATAGGTGATTGTGTCGTTGAATACCAAAGGTTG
CCTCCAAATCAAATGTTTGACAAGTGGATACCCCTTCAAAATGTGAAGAAGGGAGAGATC
CATATTCAAGTCACACGCAAAGTTCCGGATCTAGAAAAGAAAACAAGCGTAGATTCTGAG
TCCTCAGTGACCAAAGCACGCCGCCAAATTTCTAACCAGATGAAGCAAATGATGATCAAG
TTCCAGTCTTTTATAGAAGACGATGATCTTGAAGGACTTTCAGCATCACTGCACGAAATG
GAAAACCTACACGAATCCCAAGAGGAGTTTATGGTCCAGCTGGAGACTGAACAAACACTT
TTGCTCAACAAGATAAATGAGCTTGGCCAGGAAATCATTAATTCATCACCTTCCTATGCT
TTGGGTAGAAGACCTACTTTCCCTTGA

Peptide Sequence

PEP ID

XP_016497885.1
PEP Infomation

PREDICTED: synaptotagmin-5-like isoform X2 [Nicotiana tabacum]
Sequence

MQYGSYQRKILAEDLNKKWMQVLLETSPTTPLEQCEWLNKLLIEIWPTYMSPRLSLRFSS
IVERRMKQRKPKLIEKIELQEFSLGSKPPLLGLRGIRWSTSGDQKIVHLGFDWDTTDISI
MLLAKLGKPLMGTARIVINSIHIKGDLRLVPVLDGRAFLYSFVAPPEVRIGVAFGSGGSQ
SLPATELPGVSAWLVKLVNDSLSKRMVEPRRNCFSLPAVNLFKRAVAGVLSVTVMSASKL
SRSNLRSSPSRKQSSSTDSYVENLHDYKDLRTFVEVELEELTRKTDVRPGSCPRWDSKFN
MTLHEDAGTIRFNLFECTPGSVKYDYLTSCEIKMRYVADDSTMFWATGADSAAIARRAEF
CGKEIEMTVPFEGINSGELTVKLVLKEWQFADGSDSSNGLPISSQHSLNSTSSFLPRTGR
KIYVTIVEGKDLPSKDKFGKPGSGCYVKFQYGKALKRTRTVSHTSDPTWNQKFEFDEISG
GEYLKIKCFIEEMFGDENIGSARVSLEGLIEGSPRDVWIPLEKVNSGELRLQIEAVRVDD
YEGSKGSNGSSSNGWVELALIEAKDLVAADLRGTSDPYVRVQYGNLKRRTKVMYKTLHPQ
WHQTLEFPDDGSPLELHVKDHNHLLPTASIGDCVVEYQRLPPNQMFDKWIPLQNVKKGEI
HIQVTRKVPDLEKKTSVDSESSVTKARRQISNQMKQMMIKFQSFIEDDDLEGLSASLHEM
ENLHESQEEFMVQLETEQTLLLNKINELGQEIINSSPSYALGRRPTFP

Transcript Sequence

Gene sequence data has not been registered.